KEGG

Download the plot

Reactome

Download the plot

KEGG

Download the table

Reactome

Download the table

KEGG

Download the plot

Reactome

Download the plot

KEGG

Download the plot

Reactome

Download the plot

Input file format

Please input file in csv format
Can be either one column csv, indicating gene symbols (eg. Lmo2)
Or can be two column csv file, and the first column is gene symbol, second column is logFC (or any other measure for your gene list, used for coloring the network)

Species

Only human and mouse curently

Supported plot format

png
pdf, vector graph
svg, vector graph, recommended for Mac Adobe Illustrator

Why no figures?

The reason is likely to be two
First check if your species is selected correctly
Then you can toggle the pvalue and qvalue cutoff to 1 to check the enrichment of pathways in the Table panel
Figure will only be generated after you choose proper parameters for analysis and click Run!

What packages are used?

See SessinInfo page for details

Contact

Any questions or suggestions please contact feng.yan@monash.edu

Change Log

2022.03.08

update R version to 4.1.2
update clusterProfiler version to 4.2.2
add SessionInfo page to show all packages used

2020.10.27

Add action button to reduce overload server with jobs, now the analysis will only start when you click Run!. But the plotting is still reactive.
rearrange UI

2020.08.26

change the color scale when incorporating logFC, positive is red, negative is green, and 0 is always blue now.

2020.08.13

add visitor counter

2020.08.11

add manual page
change layout